Hiya Steve.
You certainly have had a fight on your hands with this.
Going back to our previous conversations...did you try isolating the master cyclinder to eliminate/find the cause?
I'd still suggest disconnecting it from the system, making up a couple of pipes with bleed nipples on the end, and then bleeding the 'system' that is essentially just the resevoir, the master cylinder and the couple of lengths of pipe.
If the problem still persists, then you've found the root cause. If you haven't, then move onto adding one (and only one) component in at a time.
It certainly sounds like the master cylinder this time, but I'm not so sure on the previous issues. The trouble is, as you've now changed so much (everything!!!) then finding the actual issue is a bit of a game of chase.
I'd certainly try testing your three other master cylinders as described above before you fit the new one. That way at least you can return the new one unused if this isn't the fault.
I know we all have everything crossed for you and your Dad here. Good luck, and hang on in there mate.
Shaun